Package: metadeconfoundR 1.0.3
Till Birkner
metadeconfoundR: Covariate-Sensitive Analysis of Cross-Sectional High-Dimensional Data
Using non-parametric tests, naive associations between omics features and metadata in cross-sectional data-sets are detected. In a second step, confounding effects between metadata associated to the same omics feature are detected and labeled using nested post-hoc model comparison tests, as first described in Forslund, Chakaroun, Zimmermann-Kogadeeva, et al. (2021) <doi:10.1038/s41586-021-04177-9>. The generated output can be graphically summarized using the built-in plotting function.
Authors:
metadeconfoundR_1.0.3.tar.gz
metadeconfoundR_1.0.3.zip(r-4.5)metadeconfoundR_1.0.3.zip(r-4.4)metadeconfoundR_1.0.3.zip(r-4.3)
metadeconfoundR_1.0.3.tgz(r-4.4-any)metadeconfoundR_1.0.3.tgz(r-4.3-any)
metadeconfoundR_1.0.3.tar.gz(r-4.5-noble)metadeconfoundR_1.0.3.tar.gz(r-4.4-noble)
metadeconfoundR_1.0.3.tgz(r-4.4-emscripten)metadeconfoundR_1.0.3.tgz(r-4.3-emscripten)
metadeconfoundR.pdf |metadeconfoundR.html✨
metadeconfoundR/json (API)
NEWS
| # Install 'metadeconfoundR' in R: |
| install.packages('metadeconfoundR', repos = c('https://tillbirkner.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tillbirkner/metadeconfoundr/issues
- metaMatMetformin - Documentation for the metaMatMetformin RData in /data
- reduced_feature - Documentation for the reduced_feature RData in /data
Last updated 1 months agofrom:3eeb7f03f0. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 21 2024 |
| R-4.5-win | OK | Nov 21 2024 |
| R-4.5-linux | OK | Nov 21 2024 |
| R-4.4-win | OK | Nov 21 2024 |
| R-4.4-mac | OK | Nov 21 2024 |
| R-4.3-win | OK | Nov 21 2024 |
| R-4.3-mac | OK | Nov 21 2024 |
Exports:BuildHeatmapGetPartialEfSizesImportLongPriorMetaDeconfound
Dependencies:backportsbootcallrcheckmateclicodetoolscolorspacedescdetectseparationdoParallelfansifarverforeachformatRfsfutile.loggerfutile.optionsggplot2gluegtableisobanditeratorslabelinglambda.rlatticelifecyclelme4lmtestlpSolveAPImagrittrMASSMatrixmgcvminqamunsellnlmenloptrpillarpkgbuildpkgconfigpkgloadplyrprocessxpsR6RColorBrewerRcppRcppEigenregistryreshape2rlangROIROI.plugin.lpsolverprojrootscalesslamstringistringrtibbleutf8vctrsviridisLitewithrzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BuildHeatmap | BuildHeatmap |
| GetPartialEfSizes | GetPartialEfSizes |
| ImportLongPrior | ImportLongPrior |
| MetaDeconfound | MetaDeconfound |
| Documentation for the metaMatMetformin RData in /data | metaMatMetformin |
| Documentation for the reduced_feature RData in /data | reduced_feature |