Package: metadeconfoundR 1.0.3

Till Birkner

metadeconfoundR: Covariate-Sensitive Analysis of Cross-Sectional High-Dimensional Data

Using non-parametric tests, naive associations between omics features and metadata in cross-sectional data-sets are detected. In a second step, confounding effects between metadata associated to the same omics feature are detected and labeled using nested post-hoc model comparison tests, as first described in Forslund, Chakaroun, Zimmermann-Kogadeeva, et al. (2021) <doi:10.1038/s41586-021-04177-9>. The generated output can be graphically summarized using the built-in plotting function.

Authors:Till Birkner [aut, cre], Sofia Kirke Forslund-Startceva [ctb]

metadeconfoundR_1.0.3.tar.gz
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metadeconfoundR.pdf |metadeconfoundR.html✨
metadeconfoundR/json (API)
NEWS

# Install 'metadeconfoundR' in R:
install.packages('metadeconfoundR', repos = c('https://tillbirkner.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tillbirkner/metadeconfoundr/issues

Datasets:

On CRAN:

5.91 score 18 stars 15 scripts 573 downloads 4 exports 67 dependencies

Last updated 4 months agofrom:3eeb7f03f0. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 19 2025
R-4.5-winOKFeb 19 2025
R-4.5-macOKFeb 19 2025
R-4.5-linuxOKFeb 19 2025
R-4.4-winOKFeb 19 2025
R-4.4-macOKFeb 19 2025
R-4.3-winOKFeb 19 2025
R-4.3-macOKFeb 19 2025

Exports:BuildHeatmapGetPartialEfSizesImportLongPriorMetaDeconfound

Dependencies:backportsbootcallrcheckmateclicodetoolscolorspacedescdetectseparationdoParallelfansifarverforeachformatRfsfutile.loggerfutile.optionsggplot2gluegtableisobanditeratorslabelinglambda.rlatticelifecyclelme4lmtestlpSolveAPImagrittrMASSMatrixmgcvminqamunsellnlmenloptrpillarpkgbuildpkgconfigpkgloadplyrprocessxpsR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasregistryreshape2rlangROIROI.plugin.lpsolverprojrootscalesslamstringistringrtibbleutf8vctrsviridisLitewithrzoo

Introduction to metadeconfoundR

Till Birkner, Sofia Kirke Forslund-Startceva

Rendered fromIntroduction_To_metadeconfoundR.rmdusingknitr::rmarkdownon Feb 19 2025.

Last update: 2024-10-22
Started: 2024-06-10