Package: metadeconfoundR 1.0.6

Till Birkner

metadeconfoundR: Covariate-Sensitive Analysis of Cross-Sectional High-Dimensional Data

Using non-parametric tests, naive associations between omics features and metadata in cross-sectional data-sets are detected. In a second step, confounding effects between metadata associated to the same omics feature are detected and labeled using nested post-hoc model comparison tests, as first described in Forslund, Chakaroun, Zimmermann-Kogadeeva, et al. (2021) <doi:10.1038/s41586-021-04177-9>. The generated output can be graphically summarized using the built-in plotting function.

Authors:Till Birkner [aut, cre], Sofia Kirke Forslund-Startceva [ctb]

metadeconfoundR_1.0.6.tar.gz
metadeconfoundR_1.0.6.zip(r-4.7)metadeconfoundR_1.0.6.zip(r-4.6)metadeconfoundR_1.0.6.zip(r-4.5)
metadeconfoundR_1.0.6.tgz(r-4.6-any)metadeconfoundR_1.0.6.tgz(r-4.5-any)
metadeconfoundR_1.0.6.tar.gz(r-4.7-any)metadeconfoundR_1.0.6.tar.gz(r-4.6-any)
metadeconfoundR_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
metadeconfoundR/json (API)
NEWS

# Install 'metadeconfoundR' in R:
install.packages('metadeconfoundR', repos = c('https://tillbirkner.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tillbirkner/metadeconfoundr/issues

Datasets:

On CRAN:

Conda:

5.76 score 20 stars 19 scripts 217 downloads 5 exports 88 dependencies

Last updated from:4dae57ed16. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK291
source / vignettesOK241
linux-release-x86_64OK297
macos-release-arm64OK282
macos-oldrel-arm64OK317
windows-develOK509
windows-releaseOK296
windows-oldrelOK293
wasm-releaseOK130

Exports:BuildConfounderMapBuildHeatmapGetPartialEfSizesImportLongPriorMetaDeconfound

Dependencies:backportsbase64encbootcachemcallrcheckmatecirclizeclicodetoolscolorspacecpp11descdetectseparationdoParalleldplyrfarverfastmapforeachfsgenericsggforceggplot2ggraphggrepelGlobalOptionsgluegraphlayoutsgridExtragtableigraphisobanditeratorsjsonlitelabelinglatticelifecyclelme4lmtestloggerlpSolveAPImagrittrMASSMatrixmemoiseminqanlmenloptrpillarpkgbuildpkgconfigpkgloadplyrpolyclipprocessxpspurrrR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasregistryreshape2rlangROIROI.plugin.lpsolverprojrootS7scalesshapeslamstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithrzoo

Introduction to metadeconfoundR

Till Birkner, Sofia Kirke Forslund-Startceva

Rendered fromIntroduction_To_metadeconfoundR.rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-04-14
Started: 2024-06-10